Ph.D. student
Professor Kunihiko Kaneko's group → Professor Shuji Ishihara's group
Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo
Phone: +81-80-3857-7745
Email: yamagishi(at)complex.c.u-tokyo.ac.jp
Education
April 2019 - Present : Graduate school of Arts and Sciences, The University of Tokyo.
March 2021: Master’s degree in Arts and Sciences, the University of Tokyo.
March 2019: Bachelor’s degree in Arts and Sciences, the University of Tokyo.
Honors (Fundings, Awards)
January 2024: JSPS Ikushi Prize, Japan Society for the Promotion of Science.
October 2023: Young Scientist Award of the Physical Society of Japan.
September 2022: Early Career Presentation Award, The Biophysical Society of Japan.
September 2022: International Union for Pure and Applied Biophysics (IUPAB) student award.
April 2021 - Present : JSPS Research Fellowships for Young Scientists DC1.
March 2021: Senko-Shorei Sho (research award for master course students), Department of Basic Science, the University of Tokyo.
March 2021: Student Presentation Award of the Physical Society of Japan (Division 12).
July 2020 - Present : The Masason Foundation Fellowships.
March 2020: Student Presentation Award of the Physical Society of Japan (Division 11).
July 2019: Complex Systems Society Award (Advances in Complex Systems - From Ecology to Economics).
March 2019: Ichi-ko Memorial Award (research award for undergraduate students), College of arts and sciences, the University of Tokyo.
March 2019: The University of Tokyo President’s Award (Grand Prize).
Papers (peer-reviewed)
Jumpei F. Yamagishi and Kunihiko Kaneko.
Universal Transitions between Growth and Dormancy via Intermediate Complex Formation.
Physical Review Letters 132, 118401, 2024.
(arXiv:2304.04239)
Jumpei F. Yamagishi and Tetsuhiro S. Hatakeyama.
Linear response theory of evolved metabolic systems.
Physical Review Letters 131, 028401, 2023.
(arXiv:2210.14508)
Masahiro Hoshino, Ryuna Nagayama, Kohei Yoshimura, Jumpei F. Yamagishi, and Sosuke Ito.
A geometric speed limit for acceleration by natural selection in evolutionary processes. Physical Review Research 5, 023127, 2023. (arXiv:2207.04640)
Jumpei F. Yamagishi and Tetsuhiro S. Hatakeyama.
Microeconomics of metabolism: The Warburg effect as Giffen behaviour.
Bulletin of Mathematical Biology, 83: 120, 2021.
(bioRxiv 613166)
Jumpei F. Yamagishi, Nen Saito, and Kunihiko Kaneko.
Adaptation of metabolite leakiness leads to symbiotic chemical exchange and to a resilient microbial ecosystem.
PLoS Computational Biology 17(6): e1009143, 2021.
(bioRxiv 2020.11.06.370924)
Jumpei F. Yamagishi and Kunihiko Kaneko.
Chaos with a high-dimensional torus. Physical Review Research 2, 023044, 2020.
(arXiv:1908.06617)
Jumpei F. Yamagishi, Nen Saito, and Kunihiko Kaneko.
Advantage of leakage of essential metabolites for cells. Physical Review Letters 124, 048101, 2020.
highlighted by Physics Buzz Blog
Jumpei F. Yamagishi, Nen Saito, and Kunihiko Kaneko.
Symbiotic Cell Differentiation and Cooperative Growth in Multicellular Aggregates. PLoS Computational Biology 12(10), e1005042, 2016.
(arXiv:1512.08085)
International Conferences (Talk)
Jumpei F. Yamagishi and Tetsuhiro S. Hatakeyama. Microeconomics of Metabolism: A Linear Response Theory of Evolved Metabolic Systems. ICBP 2023, August 14-18, 2023, Seoul, Korea.
Jumpei F. Yamagishi and Tetsuhiro S. Hatakeyama. Microeconomics of Metabolism: A Linear Response Theory of Evolved Metabolic Systems. Statistical Physics and Information-Processing in Living Systems, August 3-5, 2023, Tokyo, Japan.
Jumpei F. Yamagishi and Tetsuhiro S. Hatakeyama. Microeconomics of Metabolism: The Warburg effect as Giffen behavior. 60th Annual Meeting of BSJ, September 28-30, 2022, Hokkaido, Japan.
Jumpei F. Yamagishi, Nen Saito, and Kunihiko Kaneko. The advantage of leakage of essential metabolites and resultant symbiosis of diverse microbes. 59th Annual Meeting of BSJ, November 25-27, 2021, Online.
Jumpei F. Yamagishi, Nen Saito, and Kunihiko Kaneko. Microbial Potlatch: The advantage of leakage of essential metabolites and resultant symbiosis of diverse species. IUPAB, October 4-7, 2021, Online.
Jumpei F. Yamagishi and Kunihiko Kaneko. Chaos with a high-dimensional torus. Dynamics Days Digital 2020, August 24-27, 2020, Online.
Jumpei F. Yamagishi, Nen Saito, and Kunihiko Kaneko. Cellular Potlatch: The advantage of leakage of essential metabolites and resultant symbiosis of diverse species. Workshop Evolution of interacting populations, September 15-17, 2019, Plön, Germany.
Jumpei F. Yamagishi and Tetsuhiro S. Hatakeyama. Microeconomics of metabolism: Overflow metabolism as Giffen behavior. Advances in Complex Systems - From Ecology to Economics, July 22-26, 2019, Como, Italy.
Jumpei F. Yamagishi and Tetsuhiro S. Hatakeyama. Microeconomic metabolism: an exact mapping between q-bio and microeconomics, Winter Q-Bio 2019, February 18-22, 2019, Hawaii, USA.
International Conferences (Poster)
Jumpei F. Yamagishi and Tetsuhiro S. Hatakeyama. Microeconomics of Metabolism: The Warburg effect as Giffen behavior. 60th Annual Meeting of BSJ, September 28-30, 2022, Hokkaido, Japan.
Jumpei F. Yamagishi and Tetsuhiro S. Hatakeyama. Microeconomics of metabolism: The Warburg effect as Giffen behavior. Major ideas in quantitative microbial physiology: Past, Present and Future, June 13-15, 2022, Copenhagen, Denmark.
Jumpei F. Yamagishi, Nen Saito, and Kunihiko Kaneko. Promotion of cell growth by leakage of chemical components and its impact on symbiosis. Evolution of Diversity, February 25 - March 2, 2018, Les Houches, France.
Jumpei F. Yamagishi, Nen Saito, and Kunihiko Kaneko. Symbiotic Cell Differentiation and Cooperative Growth in Multicellular Aggregates. Winter Q-Bio 2017, February 21-24, 2017, Hawaii, USA.
Jumpei F. Yamagishi, Nen Saito, and Kunihiko Kaneko. Complementary Cell Differentiation and Collective Growth in Catalytic Reaction Networks. QBiC Symposium 2015, August 25-26, 2015, Osaka, Japan.
Seminar (Invited)
Jumpei F. Yamagishi. Microeconomics of metabolism. iTHEMS Biology Seminar, March 10, 2021, Online
邦語論文（依頼記事、査読付） (Japanese)
山岸純平, 斉藤稔, 金子邦彦. 代謝漏出による微生物の共存共栄戦略. 生物物理, Vol.61 No.6 (358号), 2021.
Outreach (Japanese)
朝日中高生新聞2021年2月14日号 異能日記4-2「好きと感じたら全力で研究」
俳句雑誌「翻車魚」3号 巻頭エッセイ「取り合わせの科学」
東京大学教養学部統合自然科学科HP 学生インタビュー
高校生のための土曜講座「物理学、生物学、経済学が交わる場所」（灘高校, 2019年10月5日）
キミの東大 「東京大学総長賞」平成30年度 受賞者の声－東大を目指すキミへのメッセージ
東京大学教養学部 編『東京大学駒場スタイル』（東京大学出版会）「〈コラム 学生の声〉生態系のスタビリチーを論じて併せて納豆の運動に及ぶ」
東京大学案内2020「先輩からのメッセージ 事故のような偶然に興ずる」
東京大学新聞2019年6月11日号「東大総長賞受賞者の素顔② 山岸純平さん ～細胞の謎に学際的に挑む～」
生命の普遍原理に迫る研究体験ゼミ 体験記
Haiku (Japanese; 山岸冬草 名義)
生駒大輔,大塚凱 編『ねじまわし 第6号』
佐藤文香 編『天の川銀河発電所 Born after 1968 現代俳句ガイドブック』